On the basis of the Kyrgyz-Uzbek University in 1998, the Uzbek-pedagogical faculty was organized to train teachers of Uzbek-language schools (Order no. 22, 05.09.1998).
In 1999, by decision of the Academic Council of the university, this faculty was divided into natural-pedagogical and humanities-pedagogical faculties.
In 2001, by decision of the Academic Council of the university, the natural-pedagogical faculty was also divided into the two: natural-mathematical and musical-pedagogical faculties.
In January 2005, by decision of the Academic Council of the university, the natural-mathematical faculty was also divided into the two: physical-mathematical and natural-geographical faculties.
In August 2013, by decision of the Academic Council of the university, the above mentioned two faculties were united, the natural-pedagogical faculty was organized and the duties of the Dean were entrusted to cand. chem. sci. B.O.Murzabaev.
On October 11, 2013, at an announced competition for the position of Dean of the natural-pedagogical faculty, a majority vote of the teaching staff elected cand. phys.-math. sci., associate professor Zulpukarov Altynbek Zulpukarovich.
On September 5, 2014, after the Dean of the natural-pedagogical faculty, cand. phys.-math. sci., associate professor Z. A. Zulpukarov was transferred to the position of director of the educational department, at an announced competition for the position of dean of the faculty, a majority vote of the teaching staff elected cand. ped. sci., associate professor Uzakbaev Ibragim Sovetovich.
On October 26, 2020, by the decision of the Academic Council of the University (Minutes No. 2, Order no. 78, October 26, 2020), the natural-pedagogical faculty was also divided into the two:
- Faculty of Natural-Pedagogical and Information Technologies (FNPIT);
- Humanities-Pedagogical Faculty (HPF).
Also, by order of the Rector, cand. phys.-math. sci., associate professor Zheentaeva Zhumagul Keneshovna was appointed Acting Dean of the Faculty of Natural Sciences and Pedagogical Information Technologies;
On December 9, 2020, at an announced competition for the position of Dean of the Faculty of Natural-Pedagogical and Information Technologies, the teaching staff unanimously elected cand. phys.-math. sci., associate professor Zheentaeva Zhumagul Keneshovna.
Based on the election results, by Order of the Rector of KUU no. 99-NI dated December 10, 2020, Zh.K. Zheentaeva became the Dean of FNPIT.